Molpro 2020.1.2 (intel)

ウェブページ

https://www.molpro.net/

バージョン

2020.1.2

ビルド環境

  • GCC 6.3.1 (devtoolset-6)
  • Intel Compiler 19.1.2 (parallel studio 2020 update 2)
  • Intel MPI 2018.0.4 (parallel studio 2018 update 4)
  • Intel MKL 2020.0.2 (parallel studio 2020 update 2)
  • Global Arrays Toolkit 5.7.2

ビルドに必要なファイル

  • Molpro_release.tar.gz (ダウンロードした Molpro_release を tar.gz で固めたもの)
  • ga-5.7.2.tar.gz
  • work.patch (/local/apl/lx/molpro2020.1.2/patches/work.patch; work directory のデフォルトを変更)
  • binput.patch (/local/apl/lx/molpro2020.1.2/patches/binput.patch; 巨大な CI 計算のためのパラメータ変更)
  • token

ビルド手順

#!/bin/sh

GA_VERSION=5.7.2
MOLPRO_VERSION=2020.1.2
MOLPRO_DIRNAME=Molpro_release
PARALLEL=12
BASEDIR=/home/users/${USER}/Software/Molpro/2020.1.2
MOLPRO_TARBALL=${BASEDIR}/${MOLPRO_DIRNAME}.tar.gz
PATCH0=${BASEDIR}/work.patch
PATCH1=${BASEDIR}/binput.patch
TOKEN=${BASEDIR}/token

WORKDIR=/work/users/${USER}
GA_INSTALLDIR=${WORKDIR}/ga-temporary
INSTALLDIR=/local/apl/lx/molpro${MOLPRO_VERSION}-intel

#------------------------------------------
umask 0022
ulimit -s unlimited

export LANG=
export LC_ALL=C
export OMP_NUM_THREADS=1

cd $WORKDIR
if [ -d ga-${GA_VERSION} ]; then
  mv ga-${GA_VERSION} ga_tmp
  rm -rf ga_tmp &
fi
if [ -d ga-temporary ]; then
  mv ga-temporary ga_tmp_tmp
  rm -rf ga_tmp_tmp &
fi
if [ -d ${MOLPRO_DIRNAME} ]; then
  mv ${MOLPRO_DIRNAME} molpro_tmp
  rm -rf molpro_tmp &
fi

module purge
module load scl/devtoolset-6
module load intel/19.1.2
module load mpi/intelmpi/2018.4.274
module load mkl/2020.0.2

#tar zxf /home/users/${USER}/Software/GlobalArrays/${GA_VERSION}/ga-${GA_VERSION}.tar.gz
unzip /home/users/${USER}/Software/GlobalArrays/${GA_VERSION}/ga-${GA_VERSION}.zip
cd ga-${GA_VERSION}

export CFLAGS="-pc80"
export FFLAGS="-pc80"
export FCFLAGS="-pc80"
export CXXFLAGS="-pc80"

export F77=mpiifort
export F90=mpiifort
export FC=mpiifort
export CC=mpiicc
export CXX=mpiicpc
export MPIF77=mpiifort
export MPICC=mpiicc
export MPICXX=mpiicpc
export GA_FOPT="-O3 -ip -w -xHost"
export GA_COPT="-O3 -ip -w -xHost"
export GA_CXXOPT="-O3 -ip -w -xHost"

# --with-ofi failed...
./autogen.sh
./configure --with-blas8 \
            --enable-i8 \
            --prefix=${GA_INSTALLDIR}

make -j ${PARALLEL}
make check
make install
cp config.log ${GA_INSTALLDIR}

cd ../
tar zxf ${MOLPRO_TARBALL}
cd ${MOLPRO_DIRNAME}

patch -p0 < ${PATCH0}
patch -p0 < ${PATCH1}

export PATH="${GA_INSTALLDIR}/bin:$PATH" # where ga-config exists

CPPFLAGS="-I${GA_INSTALLDIR}/include" \
LDFLAGS="-L${GA_INSTALLDIR}/lib" \
    ./configure --prefix=${INSTALLDIR} \
                --enable-integer8 \
                --enable-slater

LD_LIBRARY_PATH_ESC=`echo $LD_LIBRARY_PATH | sed -e 's/\//\\\\\//g'`
sed -i -e "s/^VERBOSE.*$/VERBOSE=/" \
       -e "s/^LD_ENV=.*$/LD_ENV=$LD_LIBRARY_PATH_ESC/" CONFIG
unset LD_LIBRARY_PATH_ESC

make -j ${PARALLEL}
cp $TOKEN lib/.token

make tuning

## manually modify tuning parameters!
#sed -i -e "s/tuning-mindgm.*/tuning-mindgm 0001/" \
#       -e "s/tuning-mindgc.*/tuning-mindgc 0001/" \
#       -e "s/tuning-mindgr.*/tuning-mindgr 0001/" \
#       -e "s/tuning-mindgl.*/tuning-mindgl 0001/" \
#       -e "s/tuning-mindgv.*/tuning-mindgv 0001/" lib/tuning.rc

MOLPRO_OPTIONS=-n2 make quicktest
MOLPRO_OPTIONS=-n2 make test

# failed tests
# loc_eom3.test and PNO-[RU]CCSD tests

#make install
#install -m 644 lib/.token ${INSTALLDIR}/molpro*/lib

最後の install は手動で実行しています。

テスト

  • GA のテストは全てパス
  • PNO-LCCSD 関連は動作しないため全てエラー
    • (h2odim_pnolmp2.test, h2o_rhfpr.test, h2odim_pnolccsdtf12.test, h2o_pnormp2f12.test, auh_cabs.test, c2h4_pnoccd.test, ch3oh_srmp2.test, embed_pno-lccsd-in-dft.test, form_pnoccsd.test, gly1_pnolmp2f12_xyz.test, gly1_pnolmp2f12_zmat.test, gly2_pnof12.test, gly2_pnolccd.test, gly2_pnolccsd.test, gly2_pnolmp2.test, gly2_pnolmp2_2.test, gly2_pnolmp2f12.test, gly2_pnorccsd.test, gly2_pnotriples.test, gly2_pnotriples_disk.test, h2o_pno_litf.test, h2o_pnolccsdf12.test, h2o_pnormp2f12.test, h2o_pnotriples.test, h2o_rhfpr.test, h2odim_mltp.test, h2odim_pno_singdom.test, h2odim_pnolccsd.test, h2odim_pnolccsd_f12.test, h2odim_pnolccsd_proj.test, h2odim_pnolccsdf12.test, h2odim_pnolccsdtf12.test, h2odim_pnolmp2.test, h2odim_pnolmp2_2.test, h2odim_pnolmp2_3.test, h2odim_pnolmp2f12.test, h2odim_pnorccsd.test, h2odim_pnormp2.test, ldfhf.test, ldfhf2.test)

メモ

  • PNO-LCCSD 関連はソースコードレベルで動かないようになっています。
  • パフォーマンスについても基本的には GCC 版の方が上である可能性が高いです。まずは GCC 版をお試し下さい。
  • Intel Parallel Studio 2020 update 2 の MPI を使うと GA が一部正常に動作せずフリーズするため回避。
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