GAMESS-2018Sep30 for LX
ウェブページ
https://www.msg.chem.iastate.edu/gamess/index.htmlバージョン
2018 Sep 30 R3ビルド環境
- Intel Parallel Studio XE 2017 update 8
- ifort 17.0.8
- icc 17.0.8
- MKL 2017.0.4
ビルドに必要なファイル
- gamess-2018Sep30.tar.gz
- gmsnbo.i8.a (NBO6.0)
- rungms_rccs (インストールされた rungms をご覧下さい)
- exam43.patch
--- tests/standard/exam43.inp.orig 2018-03-13 11:58:15.322187865 +0900
+++ tests/standard/exam43.inp 2018-03-13 11:58:32.049289234 +0900
@@ -48,7 +48,7 @@
! geometry in $DATA, although this is not necessary.
!
$contrl scftyp=rhf runtyp=g3mp2 $end
- $system timlim=2 mwords=2 memddi=5 $end
+ $system timlim=2 mwords=10 memddi=5 $end
$scf dirscf=.true. $end
$data
Methane...G3(MP2,CCSD(T))
- pbs_remsh
#!/bin/sh
host="$1"
shift
/usr/bin/ssh -n "$host" env PBS_JOBID="$PBS_JOBID" pbs_attach $*
ビルド手順
#!/bin/sh
VERSION=2018Sep30
DIRNAME=gamess${VERSION}
INSTDIR=/local/apl/lx/${DIRNAME}
# files and patches
GAMESS_TARBALL="/home/users/${USER}/gamess-${VERSION}.tar.gz"
GAMESS_NBOI8A="/home/users/${USER}/gmsnbo.i8.a"
PATCH_EXAM43="/home/users/${USER}/exam43.patch"
RUNGMS_RCCS="/home/users/${USER}/rungms_rccs"
PBS_REMSH="/home/users/${USER}/pbs_remsh"
#-----------------------------------------------------------------------------
umask 0022
module purge
module load intel_parallelstudio/2017update8
cd ${INSTDIR}
if [ -d gamess ]; then
mv gamess gamess-erase
rm -rf gamess-erase &
fi
tar zxf ${GAMESS_TARBALL}
mv ${INSTDIR}/gamess/* .
rm -rf ${INSTDIR}/gamess # remove a dot file and a dot directory
sed -i -e 's/MAXCPUS=32/MAXCPUS=80/' ddi/compddi
sed -i -e "s/GMS_OPENMP='false'/GMS_OPENMP='true'/" config
sed -i -e "s/EXTRAOPT -warn/EXTRAOPT -xHost -warn/" comp
sed -i -e "s/ext=log/ext=gamess/" tests/standard/checktst
sed -i -e "1s/.*/#\!\/bin\/csh -f/" comp
patch -p0 < ${PATCH_EXAM43}
cp ${PBS_REMSH} .
expect << EXPECT
spawn csh -f ./config
expect "After the new window is open"
send "\r"
expect "please enter your target machine name:"
send "linux64\r"
expect "GAMESS directory?"
send "${INSTDIR}\r"
expect "GAMESS build directory?"
send "${INSTDIR}\r"
expect "Version?"
send "\r"
expect "Please enter your choice of FORTRAN:"
send "ifort\r"
expect "Version?"
send "17\r"
expect "hit <return> to continue to the math library setup."
send "\r"
expect "Enter your choice of 'mkl' or 'atlas' or 'acml' or 'pgiblas' or 'none':"
send "mkl\r"
expect "MKL pathname?"
send "${MKLROOT}\r"
expect "MKL version (or 'proceed')?"
send "proceed\r"
expect "please hit <return> to compile the GAMESS source code activator "
send "\r"
expect "please hit <return> to set up your network for Linux clusters."
send "\r"
expect "communication library ('sockets' or 'mpi')?"
send "sockets\r"
expect "Optional: Build Michigan State University CCT3 & CCSD3A methods?"
send "yes\r"
expect "Do you want to try LIBCCHEM"
send "no\r"
expect eof
EXPECT
cd ddi && csh -f compddi && mv -f ddikick.x ../ && cd -
for i in prec mx_limits blkint cnglob efpmodule grd2_consts mpchbond \
ompmod_tools ompmod ompgrd2 params rmddat secor; do
./comp $i
done
make -j 12
GAMESS_NBOI8A_ESC=`echo ${GAMESS_NBOI8A} | sed -e 's/\//\\\\\//g'`
sed -i -e "s/NBO=false/NBO=true/" lked
sed -i -e "s/NBOLIB=.*/NBOLIB=${GAMESS_NBOI8A_ESC}/" lked
sed -i -e "s/LDOPTS='-i8'/LDOPTS='-static-intel -i8'/" lked
csh -f ./lked
mv rungms rungms.orig
cp ${RUNGMS_RCCS} ./rungms
chmod -R o-rwx source object
find . -name "src" | xargs chmod -R o-rwx
# ---- test
cd tests/standard
export OMP_NUM_THREADS=8
../runtest ${INSTDIR}/rungms 00 1
./checktst # OK
export OMP_NUM_THREADS=4
../runtest ${INSTDIR}/rungms 00 8
./checktst # exam05, 32, 39(Passed is shown, though), 42, 45, 46, 47 failed as expectedcd ../../
ipcrm -a